Bioinformatics Pipeline Engineer

Hello Professional,

 

Our client is looking Bioinformatics Pipeline Engineer project in Remote below is the detailed requirements.

Position: Bioinformatics Pipeline Engineer

Location: Remote

Job Description:

• Bachelor's degree or Master’s Degree with experience in an industrial or academic setting working, or a related field
• Develop, validate, and implement new software applications, databases, processes, and interfaces relating to next-generation sequencing (NGS) data analysis, advanced diagnostic testing development and validation, data quality review, and clinical reporting.
• Serve as SME on specific systems/workflows supporting advanced development and high-tier production support.
• Participate in resolution of support requests. Regularly report progress and prepare data analyses for internal review
• Prepare reports and other communications of technical activities related to business objectives such as product/process development and improvement.
• Activities may be focused individual projects or, more usually, assignments as a member of a project team, often working closely with other Software Developers, R&D bench scientists, Genetic Counselors, Operations Scientists, and other technical business partners.

Preferred Skills:

• Bioinformatics tools such as Dragen, bwa, VEP, FastQC, MultiQC, samtools, bedtools
• Experience with sequencing data analysis, bioinformatics, variant data analysis
• Pipeline workflow management languages: Nextflow (preferred), Cromwell, CWL, etc.
• Cloud Computing: AWS; Containerizing: Docker; Infrastructure management: Terraform, AWS CDK
• Programming Languages: Advanced level with interpreted/scripting languages such as Python, JavaScript/typescript, R, etc.
• Experience with designing and working with application programming interfaces (e.g. JSON based RESTful APIs)
• Web Frameworks: Python Flask, React Native, Bootstrap
• Reporting: Familiarity with R Markdown, Jupyter Notebook
• Visualization: Experience with any of ggplot2/tidyverse, Plotly, matplot lib, Tableau, d3.js
• Source Control: Git, CI/CD: GitHub CI/CD
• Familiarity with AI developer tools like GitHub Copilot
• Understanding of environment management
• Experience of working in clinical diagnostics setting (regulations, controlled processes, environment management) is a plus.